Containers and Workflow Pipelines for reproducible and automated data analysis
Date: 20 - 27 May 2021
Timezone: Amsterdam
Language of instruction: English
The first day is dedicated to Containers (Docker & Singularity) which are great tools for code portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify existing containers. After an extensive explanation on Docker containers, at the end of the first day, Singularity will be highlighted as well.
On the second day, you will learn how to use Nextflow for building scalable and reproducible bioinformatics pipelines and running them on a personal computer, cluster and cloud. Starting from the basic concepts we will build our own simple pipeline and add new features with every step, all in the new DSL2 language.
Keywords: advanced bioinformatics, programming, online, ELIXIR
Organizer: VIB
Event types:
- Workshops and courses
Sponsors: ELIXIR Belgium
Instructors: Alexander Botzki
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