MOPITAS Autumn School
Spatial Transcriptomics (ST) Data Analysis
Date: 12 - 14 October 2026
Timezone: Brussels
Language of instruction: English
We will cover the entire analysis pipeline, from data acquisition, raw data analysis to advanced multi-OMICS data integration techniques. We will invite internationally renowned keynote speakers as well as tool developers to guide you through the process with the latest tools and approaches.
Contact: Richard Röttger roettger(at)imada.sdu.dk
Keywords: multi-OMICS data integration techniques, Spatial transcriptomics
Venue: National Institute of Public Health, Studiestræde 6, 1455 København
City: København
Country: Denmark
Postcode: 1455
Learning objectives:
Data acquisition
Data pre-processing
Data standards and data pre-processing
Best practices of spatial transcriptomics analysis
Cell type deconvolution & Segmentation
Generating biological and clinical insights
Advanced analysis, data integration
Multi-OMICS matrix factorization
Spatial Transcriptomics in combination with single cell sequencing
Cell fate analysis
From raw data to input data
Comparative insight analysis from different pipelines
Final Project
Organizer: MOPITAS- The University of Southern Denmark
Host institutions: The University of Southern Denmark
Target audience: Early Career Researcher, PhD Students, Post-Doc research scientists
Capacity: 30
Credit / Recognition: Certificate of Attendance
Sponsors: Novo Nordisc Foundation, Danish Advanced Research Academy
Contributors: Jakub Sedzinski, 
Oliver Stegle, Markus List , Richard Rottger
Instructors: Atheer Alsayah, Malte Lücken, Elyas Heidari, Merle Stahl, Thomas Levin Geiser Andersen, Ajita Shree, Felix Petschko, Chang Lu, Christian Eger, Jakub Sedzinski, Daniel Dimitrov, Chit Tong Lio, Tomás Bordoy Garcia-Carpintero, Lucas Alexander Damberg Torp Dyssel, Thanos Pasias, Oliver Stegle, Helene Hemmer, Kim Ravnskjaer, Richard Rottger, Markus List, Lena Straßer, Jonathan Brewer
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