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VERSION:2.0
PRODID:icalendar-ruby
CALSCALE:GREGORIAN
BEGIN:VEVENT
DTSTAMP:20260829T155502Z
UID:76a76c52-9929-4a68-b93b-14007ca362ce
DTSTART:20200427T090000Z
DTEND:20200429T170000Z
DESCRIPTION:Educators:\nAxel von Kamp\, Steffen Klamt\, Sven Thiele (MPI Ma
 gdeburg)\, Frank T. Bergmann\, Ursula Kummer (University of Heidelberg)\, 
 Wolfgang Müller\, Maja Rey\, Andreas Weidemann\, Ulrike Wittig (HITS) (de
 .NBI-SysBio)\n\nDate:\n27. - 29 April 2020\n\nLocation:\nMPI Magdeburg\nSa
 ndtorstrasse 1\n39106 Magdeburg\n\nContents:\nKey concepts of stoichiometr
 ic and kinetic modeling of biochemical networks:\n- stoichiometric matrix 
 and stoichiometric networks\n- steady state flux distributions\n- principl
 es of constraint-based modeling\n- metabolic flux analysis and flux optimi
 zation (flux balance analysis)\n- metabolic pathway analysis with elementa
 ry flux modes\n- metabolic network design via minimal cut sets\n- simulati
 on of dynamic (kinetic) models\n- sensitivity analysis\n- carrying out par
 ameter estimation tasks\n- model exchange using SBML\nData and model manag
 ement:\n- manual/programmatic access to reaction kinetics data from SABIO-
 RK\n- storage and exchange of data and models using FAIRDOMHub/SEEK\n- mod
 eling specific functionalities in FAIRDOMHub/SEEK\n \nLearning goals:\nDur
 ing this 3-day course\, attendees will learn basic techniques for modeling
  of biochemical networks including data access and storage due to the FAIR
  principles. The first day introduces kinetic modeling techniques which wi
 ll be illustrated and exercised with COPASI. The second day continues with
  principles of stoichiometric and constraint-based modeling coupled with h
 ands on exercises using CellNetAnalyzer. The third day SABIO-RK is used as
  a resource for kinetic data and FAIRDOMHub/SEEK is introduced as a data a
 nd model management platform fitted to the needs of systems biologists.\n\
 nThe hands on exercises throughout the three days will ensure that attende
 es become familiar with the software tools and with analyzing\, creating\,
  editing\, importing\, simulating and storing biochemical networks.\n\nPre
 requisites:\nSome knowledge of mathematical modeling will be advantageous.
 \nThe participants should bring their own laptop with MATLAB installed (if
  you do not have MATLAB please let us know during registration).\nDownload
  and preinstallation of COPASI and CellNetAnalyzer is recommended but not 
 mandatory.\n\nKeywords:\nCellNetAnalyzer (CNA)\, COPASI\, SBML\, FAIR\, mo
 deling\, kinetic data access\, database\, data and model management\n\nToo
 ls:\nCellNetAnalyzer\, COPASI\, Matlab\, SABIO-RK\, FAIRDOMHub/SEEK
LOCATION:Magdeburg
SUMMARY:Tools for Systems biology modeling and data exchange: COPASI\, Cell
 NetAnalyzer\, SABIO-RK\, FAIRDOMHub/SEEK 2020
URL;VALUE=URI:https://www.denbi.de/training/761-tools-for-systems-biology-m
 odeling-and-data-exchange-copasi-cellnetanalyzer-sabio-rk-fairdomhub-seek-
 2020
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