Training materials
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ELIXIR TeSS
e-learning
Introduction to sequencing with Python (part four)
• BeginnerSoftware engineering Foundations of Data Science jupyter-notebook -
ELIXIR TeSS
e-learning
Data Manipulation Olympics - SQL
• BeginnerSoftware engineering Foundations of Data Science cyoa jupyter-notebook sql -
ELIXIR TeSS
e-learning
Data Manipulation Olympics - JQ
• BeginnerSoftware engineering Foundations of Data Science cyoa json -
ELIXIR TeSS
e-learning
Creating an Official Gene Set
• BeginnerGenomics Genome Annotation apollo2 gmod work-in-progress -
ELIXIR TeSS
e-learning
Genome Annotation
• BeginnerGenomics Genome Annotation prokaryote work-in-progress -
ELIXIR TeSS
e-learning
Identification of AMR genes in an assembled bacterial genome
• BeginnerGenomics Whole genome sequencing Public health and epidemiology Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod … -
ELIXIR TeSS
e-learning
Bacterial Genome Annotation
• BeginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod … -
ELIXIR TeSS
e-learning
Binning of metagenomic sequencing data
•• IntermediateMetagenomics Microbial ecology Sequence assembly Microbiome binning metagenomics microgalaxy -
ELIXIR TeSS
e-learning
16S Microbial Analysis with mothur (extended)
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
ELIXIR TeSS
e-learning
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy