Materials - Bioconductor

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- Scientific topic
- MS-based untargeted proteomics
- Data management267
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- Research data management (RDM)267
- Genome annotation224
- Exomes203
- Genomes203
- Genomics203
- Personal genomics203
- Synthetic genomics203
- Viral genomics203
- Whole genomes203
- FAIR data197
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- MicroRNA sequencing126
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- WTSS126
- Whole transcriptome shotgun sequencing126
- miRNA-seq126
- Algorithms124
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- Chromosome walking106
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- DNA-Seq106
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- Next gen sequencing106
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- Bioinformatics96
- Metagenomics82
- Shotgun metagenomics82
- Biodiversity73
- Data rendering68
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- Bottom-up proteomics65
- Discovery proteomics65
- MS-based targeted proteomics65
- Metaproteomics65
- Peptide identification65
- Protein and peptide identification65
- Proteomics65
- Quantitative proteomics65
- Targeted proteomics65
- Top-down proteomics65
- Single-cell genomics60
- Single-cell sequencing60
- Antimicrobial stewardship56
- Medical microbiology56
- Microbial genetics56
- Microbial physiology56
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- Operation
- Data handling1
- File handling1
- File processing1
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- Tool
- Galaxy33
- msConvert5
- MaxQuant4
- MSstats3
- BLAST2
- Biopython2
- FreeBayes2
- HISAT22
- StringTie2
- UniProt2
- bed to protein map2
- customProDB2
- gffcompare2
- metaQuantome2
- Cardinal1
- Cytoscape1
- DISEASES1
- Data Stewardship Wizard1
- EncyclopeDIA1
- FlashLFQ1
- MSstatsTMT1
- OptiType1
- RDMkit1
- STAR1
- STITCH1
- STRING1
- Seq2HLA1
- The Immune Epitope Database (IEDB)1
- Unipept1
- WoLF PSORT1
- compareMS21
- diaPASEF1
- ggplot21
- multiGSEA1
- mzToSQLite1
- scp1
- stringApp1
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- Standard database or policy
- European Nucleotide Archive1
- FAIRsharing1
- PRoteomics IDEntifications database1
- RDA DMP Common Standard for Machine-Actionable Data Management Plans1
- STRING: functional protein association networks1
- Search Tool for Interactions of Chemicals1
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- GTN37
- Glittr.org9
- European Bioinformatics Institute (EBI)8
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- Novo Nordisk Foundation Center for Protein Research1
- SIB Swiss Institute of Bioinformatics1
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- Keyword
- Proteomics46
- DDA9
- label-free9
- DIA4
- R4
- microgalaxy4
- human3
- proteogenomics3
- proteomics3
- HeLa2
- transcriptomics2
- Data Life Cycle1
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- EeLP1
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- Introduction1
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- Next generation sequencing1
- Phosphoproteomics1
- Protein Mass Spectrometry1
- Protein identification1
- Proteomes1
- Python1
- RNA-seq1
- Research Data Management1
- Research Infrastructure1
- Reusability1
- SILAC1
- Spatial omics1
- TMT1
- Transcriptomics1
- cancer1
- eLearning1
- imaging1
- mass spectrometry imaging1
- metabolomics1
- mouse1
- multi-omics1
- multi-omics data integration1
- quantitative proteomics1
- single-cell transcriptomics1
- training1
- work-in-progress1
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- Competency level
- Beginner25
- Not specified21
- Intermediate17
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- Licence
- Creative Commons Attribution 4.0 International42
- License Not Specified18
- Creative Commons Attribution Share Alike 4.0 International3
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
- MIT License1
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- Target audience
- Students38
- PhD students4
- Bioinformaticians3
- Clinicians3
- Biologists2
- bioinformaticians2
- biologists2
- Biochemists1
- Bioinformatician, Bioanalysts1
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- PhD Students1
- PhD Students or young researchers in molecular biology and/or genetics with little or no background in bioinformatics.1
- PhD candidates1
- PhD students in Genomics datascience1
- Postdocs and Staff members1
- Principal Investigators1
- Principal Investigators (PIs)1
- Researchers1
- life scientists1
- mass spectrometry1
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- Author
- Subina Mehta15
- James Johnson12
- Björn Grüning9
- Melanie Föll9
- Matthias Fahrner8
- Pratik Jagtap8
- Timothy J. Griffin8
- Florian Christoph Sigloch7
- Katherine Do7
- Praveen Kumar5
- Emma Leith4
- Marie Crane3
- Ray Sajulga3
- The Gulbenkian Training Programme in Bioinformatics3
- Computational Biology and Bioinformatics at UCLouvain2
- Daniel Blankenberg2
- David Christiany2
- Florence Combes2
- Jayadev Joshi2
- Valentin Loux2
- Yves Vandenbrouck2
- Andrea Argentini1
- Clemens Blank1
- Delphine Lariviere1
- Espen Åberg1
- Federico Bianchini1
- Frederik Coppens1
- Hana Pergl Sustkova1
- Health Data Science Sandbox1
- Helen V. Cook1
- Helge Hecht1
- Illimar Rekand1
- Klemens Fröhlich1
- Korbinian Bösl1
- Kristina Gomoryova1
- Lars Juhl Jensen1
- Lennart Martens1
- Lieven Clement1
- Magnus Palmblad1
- Marek Vrbacky1
- Martin Hubalek1
- Matrix Science Ltd1
- Matthias Bernt1
- Melanie Foell1
- Monique Zahn1
- Nadezhda T. Doncheva1
- Nazeefa Fatima1
- Pavel Dvorak1
- PickyBinders1
- Thorben Stehling1
- bioinformatics.ca1
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- Contributor
- Saskia Hiltemann34
- Björn Grüning28
- Melanie Föll27
- Subina Mehta24
- Helena Rasche19
- Bérénice Batut14
- Nicola Soranzo13
- Armin Dadras8
- Martin Čech8
- Niall Beard8
- Pratik Jagtap8
- Katherine Do7
- Timothy J. Griffin7
- Florian Christoph Sigloch6
- William Durand5
- Clemens Blank4
- Laurent Gatto3
- Mallory Freeberg3
- Pavankumar Videm3
- The Gulbenkian Training Programme in Bioinformatics3
- lievenclement3
- Florence Combes2
- Jayadev Joshi2
- Matthias Fahrner2
- Veit Schwämmle2
- Amirhossein Naghsh Nilchi1
- Andrea Argentini1
- Anthony Bretaudeau1
- Anton Nekrutenko1
- Axelle Loriot1
- Benjamin Neely1
- Canadian Bioinformatics Workshops1
- Charlotte Soneson1
- Cristóbal Gallardo1
- David Bouyssié1
- Frederik Coppens1
- Hana Pergl Sustkova1
- Helge Hecht1
- Jacob Fredegaard Hansen1
- James Johnson1
- Janick Mathys1
- Jay1
- John "Scooter" Morris1
- Juan Antonio Vizcaino1
- JulieDevis1
- Koen Van den Berge1
- Kristina Gomoryova1
- Lev Levitsky1
- Lieven Clement1
- Lucille Delisle1
- Lydie Lane1
- Manon Martin1
- Marc Vaudel1
- Marek Vrbacky1
- Martin Hubalek1
- Martin Morgan1
- Melanie Foell1
- Mélanie Petera1
- Oliver Crook1
- Pavel Dvorak1
- Pedro L Fernandes1
- Polydefkis Diamantis1
- Rob Marissen1
- Samuele Soraggi1
- Wolfgang Maier1
- npinter1
- phusen1
- skringe1
- zhibinlu1
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- e-learning39
- Recorded webinar5
- slides4
- Slides3
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- Video2
- R Shiny application1
- Webinar1
- course materials1
- scripts1
- tutorial1
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- Related resource
- Associated Training Datasets29
- Associated Workflows26
- compareMS21
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