Training materials
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PaN Training
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
Heatmap Nanopore data analysis Pathogens detection Phylogenetic tree cyoa metagenomics microgalaxy
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PaN Training
Microbial Variant Calling
gmod introduction jbrowse1 microgalaxy prokaryote
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PaN Training
Bacterial Genome Annotation
bacteria gmod illumina jbrowse1 microgalaxy prokaryote
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PaN Training
Dataset construction for bacterial comparative genomics
microgalaxy work-in-progress
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PaN Training
Bacterial genome quality control
microgalaxy work-in-progress
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PaN Training
Comparative gene analysis in unannotated genomes
annotation biodiversity cookbook eukaryote evolution microgalaxy prokaryote vgp
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PaN Training
Essential genes detection with Transposon insertion sequencing
bacteria essential genes microgalaxy prokaryote tnseq
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PaN Training
Genome annotation with Prokka
gmod jbrowse1 microgalaxy prokaryote
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PaN Training
Identification of AMR genes in an assembled bacterial genome
amr gmod illumina jbrowse1 microgalaxy one-health prokaryote
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PaN Training
Refining Genome Annotations with Apollo (prokaryotes)
apollo2 biodiversity gmod jbrowse1 microgalaxy prokaryote