Training materials
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PaN Training
Identifying tuberculosis transmission links: from SNPs to transmission clusters
microgalaxy one-health prokaryote
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PaN Training
Tree thinking for tuberculosis evolution and epidemiology
microgalaxy one-health phylogenetics prokaryote
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PaN Training
Phylogenetic analysis for bacterial comparative genomics
microgalaxy work-in-progress
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PaN Training
Checking expected species and contamination in bacterial isolate
bacteria ecologypreprocess illumina microgalaxy
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PaN Training
Making sense of a newly assembled genome
gmod jbrowse1 microgalaxy prokaryote
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PaN Training
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
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PaN Training
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
amr assembly microgalaxy nanopore
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PaN Training
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
assembly illumina microgalaxy
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PaN Training
Unicycler Assembly
biodiversity microgalaxy prokaryote
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ELIXIR TeSS
e-learning
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
•• IntermediateMetagenomics Microbial ecology Sequence assembly Microbiome assembly binning metagenomics microgalaxy