Materials - Bioconductor

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- Scientific topic
- Data management
- Metadata management254
- Research data management (RDM)254
- Genome annotation224
- Exomes203
- Genomes203
- Genomics203
- Personal genomics203
- Synthetic genomics203
- Viral genomics203
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- FAIR data196
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- R153
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- MicroRNA sequencing126
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- Small RNA sequencing126
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- WTSS126
- Whole transcriptome shotgun sequencing126
- miRNA-seq126
- Algorithms124
- Computer programming124
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- Chromosome walking106
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- DNA-Seq106
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- Metagenomics81
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- Biodiversity73
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- Bottom-up proteomics63
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- Peptide identification63
- Protein and peptide identification63
- Proteomics63
- Quantitative proteomics63
- Targeted proteomics63
- Top-down proteomics63
- Single-cell genomics60
- Single-cell sequencing60
- Antimicrobial stewardship56
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- Operation
- Data handling41
- File handling41
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- Data analysis10
- Data extraction7
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- Database retrieval5
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- Query and retrieval5
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- Data management planning3
- Normalisation3
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- Standardisation and normalisation3
- Data formatting2
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- Design2
- File format conversion2
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- File reformatting2
- Format conversion2
- Annotation1
- Data brokering1
- Data deposition1
- Data deposition brokering1
- Data submission1
- Data visualisation1
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- Molecular visualisation1
- Ontology browsing1
- Ontology visualisation1
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- Tool
- Data Stewardship Wizard16
- RDMkit6
- Ontology Lookup Service4
- RStudio3
- Zooma3
- European Nucleotide Archive (ENA)2
- ChEBI1
- Data Information System (DAISY)1
- DataDiscovery1
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- Standard database or policy
- European Nucleotide Archive2
- FAIRsharing2
- Ontology Lookup Service2
- RDA DMP Common Standard for Machine-Actionable Data Management Plans2
- Wheat Data Interoperability Guidelines 1
- Cellosaurus1
- Minimum Information about Plant Phenotyping Experiment1
- ModelArchive1
- OBO Foundry1
- PRoteomics IDEntifications database1
- Resource Identification Portal 1
- The European Genome-phenome Archive1
- The FAIR Principles1
- The Observational Medical Outcomes Partnership Common Data Model1
- UniProt Knowledgebase1
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- Content provider
- Glittr.org55
- DTLS - Dutch Techcentre For Life Sciences32
- PaN Training23
- European Bioinformatics Institute (EBI)19
- SIB Swiss Institute of Bioinformatics17
- ELIXIR13
- NBIS9
- CINECA PROJECT7
- Barcelona Supercomputing Center (BSC)6
- IFB French Institute of Bioinformatics5
- VIB Training & Conferences5
- BioData.pt4
- Data Steward team Ghent University4
- ELIXIR Estonia4
- GTN4
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- ELXIR-UK DaSH2
- Coursera1
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- Health-RI1
- NanoCommons1
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- University of Edinburgh1
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- Keyword
- Data management87
- FAIR data63
- FAIR26
- Reproducibility21
- Metadata19
- FAIR principles18
- Open Science15
- Data management planning13
- DMP12
- Research Data Management12
- Clinical data11
- Data reuse11
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- European research projects11
- HemaFAIR11
- data stewardship10
- CONVERGE9
- Data analysis9
- Knowledge graph9
- RDF9
- SPARQL9
- DMP tools8
- Data Management8
- data management8
- research data management8
- DMP templates7
- Data Management Plan7
- Data managment plan7
- ELIXIR-CONVERGE7
- Ontologies7
- Ontology7
- data management plan7
- Data Life Cycle6
- Data management planning6
- Interoperability6
- Open science6
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- Standards6
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- template6
- DMP evaluation5
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- GDPR5
- README5
- metadata5
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- PaNOSC4
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- R4
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- Unix/Linux4
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- competency4
- data sharing4
- deploying4
- discovery4
- e-learning4
- software tools4
- tools4
- Annotation3
- Data collection3
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- Data processing3
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- Data visualization3
- FAIR Data3
- General3
- GraphDB3
- Next generation sequencing3
- Python3
- RStudio3
- SNOMED CT3
- SciCat3
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- Spanish3
- Transcriptomics3
- catalogue3
- data organisation3
- evaluation3
- on-line3
- Data reuse2
- ATC2
- Backup strategy2
- CHOP2
- Cohort data2
- Conceptualization2
- DSW2
- Data2
- Data integration2
- Data science2
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- Competency level
- Not specified133
- Beginner108
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- Licence
- License Not Specified93
- Creative Commons Attribution 4.0 International92
- Creative Commons Attribution Share Alike 4.0 International37
- Creative Commons Attribution Non Commercial Share Alike 4.0 International11
- Creative Commons Attribution Non Commercial 4.0 International5
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International5
- Creative Commons Zero v1.0 Universal4
- MIT License3
- GNU Affero General Public License v3.0 only2
- Creative Commons Attribution No Derivatives 4.0 International1
- Open Data Commons Attribution License v1.01
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- Target audience
- Researchers27
- PhD candidate25
- Bioinformaticians16
- Data Managers15
- PhD candidates15
- Data stewards14
- Data Scientists13
- Students13
- Research Scientists12
- Scientists12
- Biomedical Researchers11
- Data Scientist11
- Data managers11
- Life Science Researchers11
- Researcher in life sciences11
- life scientists10
- data stewards9
- Clinicians7
- PhD students7
- PhD Students6
- Researcher5
- bioinformaticians5
- data managers5
- Biologists4
- Biomedical researchers4
- Galaxy Administrators4
- Life Scientists4
- Photon Community4
- archaeologists4
- crystallography4
- material scientists4
- neutron community4
- project manager4
- spectroscopy4
- Biologists with little or no prior computational experience3
- Data Steward3
- Beginner2
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Data Manager2
- Master students2
- Ontologists2
- PI2
- diffraction2
- imaging2
- policy officer2
- Analysts1
- Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).1
- Bioinformatician, Bioanalysts1
- Chemists1
- DMP writers1
- Developers1
- ECR1
- IT support1
- Life scientists1
- PhD1
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members1
- PhD students in Genomics datascience1
- Policy makers1
- Post-Doctoral Fellows1
- Postdocs and Staff members1
- Postgraduate students1
- Principal Investigators1
- Principal Investigators (PIs)1
- Professor1
- Research Software Engineers1
- Research scientists1
- Student1
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- The course is aimed at research scientists with a minimum of a degree in a biological discipline, including laboratory and clinical staff, as well as specialists in related fields.1
- This workshop is aimed at PhD students within the PhD programme "Genetics, Molecular and Cellular Biology" (University of Pavia) and the PhD programmme "Biomolecular Sciences and Biotechnology" (IUSS, University School for Advanced Studies Pavia.1
- biocurators1
- data manager1
- database managers1
- geneticists1
- operational manager1
- plant researchers1
- researchers1
- researchers, educators, and research support staff1
- software developers, bioinformaticians1
- software engineers1
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- Author
- Mijke Jetten13
- Personalized Health Informatics Group12
- NBIS - National Bioinformatics Infrastructure Sweden11
- Celia van Gelder9
- The Carpentries Incubator9
- Vasundra Touré6
- Daniel Faria5
- Diana Pilvar5
- Monique Zahn5
- Federico Bianchini4
- Fred Hutch Data Science Lab4
- Helena Rasche4
- Heleri Inno4
- Nadia Tonello4
- Nazeefa Fatima4
- SIB Swiss Institute of Bioinformatics4
- Alexander Botzki3
- BioRDM3
- Data Carpentry3
- Emma Griffiths3
- Erik Hedman3
- Frédéric de Lamotte3
- Niclas Jareborg3
- Ronald Cornet3
- Annalisa Landi2
- Anne-Françoise Adam-Blondon2
- British Ecological Society Better Science Guides2
- Cesar Bernabe2
- Christine Staiger2
- Coding For Reproducible Research (CfRR)2
- Cyril Pommier2
- Deepak Unni2
- Elin Kronander2
- Espen Åberg2
- Esther Plomp2
- FAIR-by-Design-Methodology2
- Flora D'Anna2
- Griet Den Herder2
- Hanne Elsen2
- Illimar Rekand2
- Institut Français de Bioinformatique (IFB)2
- Jan Lammertyn2
- Jan Slifka2
- Korbinian Bösl2
- Laura Portell Silva2
- Marek Suchánek2
- Markus Englund2
- Marta Lloret Llinares2
- Mattias Strömberg2
- Mirela Minkova2
- Nate Coraor2
- Nikola Vasiljevic2
- OBOAcademy2
- OpenSciency2
- Paula Oset2
- Paulette Lieby2
- Petar Horki2
- Philip Krauss2
- Pinar Alper2
- Santosh Ilamparuthi2
- SciLifeLab-Training2
- Stephan Nylinder2
- Tereza Machačová2
- Tuur Muyldermans2
- VIB Technologies: Training material and software projects2
- Vilem Ded2
- Yvonne Kallberg2
- feichtingerm2
- jhudsl2
- Amy Heather1
- Ana M. P. Melo1
- Ana M.P. Melo1
- Anastasia Chasapi1
- Andri Papadopoulou1
- BiGCaT, Department of Translational Genomics1
- BioData.pt1
- Brett Olivier1
- CRUK CI Bioinformatics Core1
- Cees Hof1
- Celia W.G. van Gelder1
- Célia Michotey1
- Daniel Wibberg1
- Daphne Wijnbergen1
- David Dolan1
- David Rayner1
- Dawa Ometto1
- Dayane Araujo1
- Dietmar Hertsen1
- ELIXIR Belgium1
- ELIXIR Europe1
- ELIXIR Europe Training1
- ELIXIR-Norway Training1
- Egon Willighagen1
- Elizabeth Arnaud1
- Elize Vlainic1
- Erik Flikkenschild1
- Evangelia Papoutsoglou1
- Ewan Birney1
- Filipa Pereira1
- Genome Informatics Facility1
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- Contributor
- Elin Kronander16
- Wolmar Nyberg Åkerström16
- Toby Hodges15
- François Michonneau13
- Zhian N. Kamvar13
- Erin Becker12
- Tracy Teal12
- Niclas Jareborg11
- Petros Kountouris11
- maneesha11
- Michael R. Crusoe10
- Paula Andrea Martinez10
- Remi Rampin10
- Abby Cabunoc Mayes9
- Allen Lee9
- Andy Boughton9
- Christina K.9
- David Pérez-Suárez9
- James Allen9
- Jon Pipitone9
- Katie Anne Mills9
- Katrin Leinweber9
- Michael Hansen9
- Piotr Banaszkiewicz9
- Rayna M Harris9
- Rémi Emonet9
- Sarah Brown9
- W. Trevor King9
- Alex Whan8
- Ana Conrado8
- Andrew Sanchez8
- Anthony Gitter8
- Brandon Curtis8
- David Mawdsley8
- EvanWill8
- Gabriel A. Devenyi8
- Gerard Capes8
- Greg Wilson8
- Henry Schreiner8
- Ian Lee8
- Jeff Oliver8
- Jemma Stachelek8
- Joel Nothman8
- Jonah Duckles8
- João Rodrigues8
- K.E. Koziar8
- Markus Englund8
- Maxim Belkin8
- Michael Joseph8
- Nick Young8
- Paola Prieto8
- Raniere Silva8
- Renato Alves8
- Sabine Österle8
- Stephan Druskat8
- William L. Close8
- YvonneKallberg8
- naught1018
- trk8
- Erik Hedman7
- Mattias Strömberg7
- Stephan Nylinder7
- Yvonne Kallberg7
- rdbjorvang6
- Candace Savonen4
- Carrie Wright4
- Helena Rasche4
- Kate Isaac4
- Martijn Kersloot4
- Saskia Hiltemann4
- Tomasz Zielinski4
- Vassilios Ioannidis4
- actions-user4
- jhudsl-robot4
- Edward Wallace3
- Federico Bianchini3
- Geert van Geest3
- Julien Seiler3
- Laura Portell Silva3
- Nicola Soranzo3
- Pete3
- Robert Davey3
- Stephan3
- The Carpentries Incubator3
- Thomas Denecker3
- Vasundra Touré3
- hackmd-deploy3
- livia-scorza3
- Aleksandra Pawlik2
- Alexander Botzki2
- Benson Muite2
- Bert Droesbeke2
- BioData.pt Admin2
- Björn Grüning2
- Bérénice Batut2
- Celia van Gelder2
- Christian2
- Christie Bahlai2
- Daniel Faria2
- Danielle Welter2
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- Video38
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- Slidedeck28
- e-learning26
- Training materials25
- lessons20
- video13
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- Webinar12
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- Recorded webinar10
- E-learning9
- PDF5
- course materials4
- service4
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- E-Learning3
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- hands-on tutorial3
- online modules2
- online tutorial2
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- youtube video2
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- FREE online course1
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- slide deck / presentation1
- slides / presentation1
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- Related resource
- Research Data Management in Life Sciences9
- The Carpentries7
- DMPonline3
- Data Stewardship Wizard3
- Slides3
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- DMPortal1
- GEEM1
- GitHub1
- OpenRefine1
- RDMkit1
- Ready For BioData Management?1
- Video Walkthrough of the Poster1
- Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle1
- Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
- elabFTW1
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- Collection
- HemaFAIR Training: Applying FAIR Principles in Hematology Research11
- Elements of Data Management5
- PINK project4
- ELIXIR Biodiversity Community1
- ELIXIR Toxicology Community1
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- Status
- Active81
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