Training materials
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ELIXIR TeSS
e-learning
Converting between common single cell data formats
• BeginnerSingle Cell data import data management sc_formats -
ELIXIR TeSS
e-learning
Identification of the micro-organisms in a beer using Nanopore sequencing
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome beer citizen science metagenomics microgalaxy nanopore -
ELIXIR TeSS
e-learning
Taxonomic Profiling and Visualization of Metagenomic Data
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome metagenomics microgalaxy taxonomic profiling -
ELIXIR TeSS
e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• BeginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
ELIXIR TeSS
e-learning
Pathway analysis with the MINERVA Platform
•• IntermediateTranscriptomics Transcriptomics bulk cyoa rna-seq viz -
ELIXIR TeSS
e-learning
Fine tune large protein model (ProtTrans) using HuggingFace
• BeginnerStatistics and probability Statistics and machine learning deep-learning dephosphorylation-site-prediction fine-tuning interactive-tools jupyter-lab machine-learning -
ELIXIR TeSS
e-learning
Phylogenetics - Back to basics
•• IntermediateEvolutionary biology Evolution evolution phylogenetics -
ELIXIR TeSS
e-learning
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
• BeginnerSequence analysis Sequence analysis covid19 gmod jbrowse1 -
ELIXIR TeSS
e-learning
Inferring single cell trajectories with Scanpy
• BeginnerMIGHTS Single Cell paper-replication -
ELIXIR TeSS
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat
• BeginnerMIGHTS Single Cell paper-replication